IL_9F9S_006
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AU*AGUUGU
- Length
- 8 nucleotides
- Bulged bases
- 9F9S|1|L1|U|147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_006 not in the Motif Atlas
- Homologous match to IL_8P9A_236
- Geometric discrepancy: 0.0747
- The information below is about IL_8P9A_236
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10396.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9F9S|1|L1|A|123
9F9S|1|L1|U|124
*
9F9S|1|L1|A|144
9F9S|1|L1|G|145
9F9S|1|L1|U|146
9F9S|1|L1|U|147
9F9S|1|L1|G|148
9F9S|1|L1|U|149
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain L2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LC
- 60S ribosomal protein L8-A
- Chain LI
- 60S ribosomal protein L15-A
- Chain Lj
- 60S ribosomal protein L35-A
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