IL_9F9S_056
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 9F9S|1|L1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_056 not in the Motif Atlas
- Homologous match to IL_8C3A_063
- Geometric discrepancy: 0.0694
- The information below is about IL_8C3A_063
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
9F9S|1|L1|U|1388
9F9S|1|L1|G|1389
9F9S|1|L1|A|1390
9F9S|1|L1|C|1391
9F9S|1|L1|G|1392
9F9S|1|L1|A|1393
9F9S|1|L1|A|1394
9F9S|1|L1|G|1395
*
9F9S|1|L1|U|1415
9F9S|1|L1|C|1416
9F9S|1|L1|G|1417
9F9S|1|L1|A|1418
9F9S|1|L1|A|1419
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain L2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L6-B
- Chain LK
- 60S ribosomal protein L17-A
- Chain Lm
- 60S ribosomal protein L32
- Chain Ls
- 60S ribosomal protein L26-A
- Chain Ly
- 60S ribosomal protein L4-A
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