IL_9F9S_078

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9F9S|1|L1|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_078 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0635

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9F9S|1|L1|C|1918
9F9S|1|L1|G|1919
9F9S|1|L1|U|1920
9F9S|1|L1|A|1921
9F9S|1|L1|A|1922
9F9S|1|L1|C|1923
*
9F9S|1|L1|G|1928
9F9S|1|L1|G|1929
9F9S|1|L1|A|1930
9F9S|1|L1|U|1931
9F9S|1|L1|A|1932
9F9S|1|L1|A|1933
9F9S|1|L1|G|1934

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lb

60S ribosomal protein L43-A

Chain Ld

60S ribosomal protein L41-A

Chain S1

Small subunit ribosomal RNA; SSU rRNA