IL_9F9S_084

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

9F9S|1|L1|A|2242, 9F9S|1|L1|A|2243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_084 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.0643

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

9F9S|1|L1|U|2200
9F9S|1|L1|G|2201
*
9F9S|1|L1|U|2241
9F9S|1|L1|A|2242
9F9S|1|L1|A|2243
9F9S|1|L1|A|2244

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lw

60S ribosomal protein L2-A