IL_9F9S_086

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_086 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.0711

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9F9S|1|L1|U|2211
9F9S|1|L1|C|2212
9F9S|1|L1|A|2213
9F9S|1|L1|A|2214
9F9S|1|L1|A|2215
9F9S|1|L1|G|2216
9F9S|1|L1|U|2217
*
9F9S|1|L1|A|2228
9F9S|1|L1|A|2229
9F9S|1|L1|C|2230
9F9S|1|L1|C|2231
9F9S|1|L1|A|2232
9F9S|1|L1|A|2233
9F9S|1|L1|G|2234

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Li

60S ribosomal protein L36-A