IL_9F9S_088

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9F9S|1|L1|A|2281, 9F9S|1|L1|C|2287, 9F9S|1|L1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_088 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0659

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9F9S|1|L1|C|2277
9F9S|1|L1|C|2278
9F9S|1|L1|A|2279
9F9S|1|L1|A|2280
9F9S|1|L1|A|2281
9F9S|1|L1|U|2282
9F9S|1|L1|G|2283
9F9S|1|L1|C|2284
9F9S|1|L1|C|2285
9F9S|1|L1|U|2286
9F9S|1|L1|C|2287
9F9S|1|L1|G|2288
*
9F9S|1|L1|C|2304
9F9S|1|L1|G|2305
9F9S|1|L1|C|2306
9F9S|1|L1|G|2307

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Ld

60S ribosomal protein L41-A

Chain S1

Small subunit ribosomal RNA; SSU rRNA