IL_9F9S_096
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAU*AGUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_096 not in the Motif Atlas
- Homologous match to IL_8P9A_326
- Geometric discrepancy: 0.0915
- The information below is about IL_8P9A_326
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14250.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 10
Unit IDs
9F9S|1|L1|C|2666
9F9S|1|L1|A|2667
9F9S|1|L1|U|2668
*
9F9S|1|L1|A|2686
9F9S|1|L1|G|2687
9F9S|1|L1|U|2688
9F9S|1|L1|A|2689
9F9S|1|L1|G|2690
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain L3
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- 60S ribosomal protein L11-A
- Chain LO
- 60S ribosomal protein L21-A
- Chain Lz
- 60S ribosomal protein L5
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