IL_9F9S_110

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9F9S|1|L1|A|2971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_110 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.2998

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9F9S|1|L1|C|2960
9F9S|1|L1|G|2961
*
9F9S|1|L1|C|2970
9F9S|1|L1|A|2971
9F9S|1|L1|G|2972

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain CC

Uncharacterized protein YEL057C

Chain CP

Transfer RNA; tRNA

Chain LE

60S ribosomal protein L10

Chain Lw

60S ribosomal protein L2-A