IL_9F9S_133

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

9F9S|1|L1|U|3354, 9F9S|1|L1|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_133 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.5218

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

9F9S|1|L1|C|3349
9F9S|1|L1|C|3350
*
9F9S|1|L1|G|3353
9F9S|1|L1|U|3354
9F9S|1|L1|U|3355
9F9S|1|L1|G|3356

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lv

60S ribosomal protein L22-A

Chain Si

40S ribosomal protein S8-A