IL_9F9S_138

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GUAG

Length

6 nucleotides

Bulged bases

9F9S|1|L3|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_138 not in the Motif Atlas

Homologous match to IL_8C3A_145

Geometric discrepancy: 0.1018

The information below is about IL_8C3A_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15052.3

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

9F9S|1|L3|C|28
9F9S|1|L3|C|29
*
9F9S|1|L3|G|49
9F9S|1|L3|U|50
9F9S|1|L3|A|51
9F9S|1|L3|G|52

Current chains

Chain L3

Saccharomyces cerevisiae S288C 5S ribosomal RNA

Nearby chains

Chain LF

60S ribosomal protein L11-A

Chain Lz

60S ribosomal protein L5