IL_9F9S_142
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGUG*CAU
- Length
- 7 nucleotides
- Bulged bases
- 9F9S|1|L3|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_142 not in the Motif Atlas
- Homologous match to IL_8C3A_149
- Geometric discrepancy: 0.06
- The information below is about IL_8C3A_149
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
9F9S|1|L3|A|84
9F9S|1|L3|G|85
9F9S|1|L3|U|86
9F9S|1|L3|G|87
*
9F9S|1|L3|C|94
9F9S|1|L3|A|95
9F9S|1|L3|U|96
Current chains
- Chain L3
- Saccharomyces cerevisiae S288C 5S ribosomal RNA
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LB
- 60S ribosomal protein L7-A
- Chain LE
- 60S ribosomal protein L10
- Chain LN
- 60S ribosomal protein L20-A
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