IL_9F9S_143

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_143 not in the Motif Atlas

Homologous match to IL_8C3A_001

Geometric discrepancy: 0.1216

The information below is about IL_8C3A_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|M1|G|5
9F9S|1|M1|A|6
9F9S|1|M1|C|7
*
9F9S|1|M2|G|152
9F9S|1|M2|U|153
9F9S|1|M2|C|154

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Chain M2

Saccharomyces cerevisiae S288C 5.8S ribosomal RNA

Nearby chains

Chain MC

60S ribosomal protein L8-A

Chain Mt

60S ribosomal protein L25