IL_9F9S_158
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_158 not in the Motif Atlas
- Homologous match to IL_8P9A_244
- Geometric discrepancy: 0.0622
- The information below is about IL_8P9A_244
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.1
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
9F9S|1|M1|G|404
9F9S|1|M1|U|405
9F9S|1|M1|G|406
9F9S|1|M1|A|407
9F9S|1|M1|A|408
9F9S|1|M1|A|409
9F9S|1|M1|U|410
*
9F9S|1|M2|A|13
9F9S|1|M2|C|14
9F9S|1|M2|G|15
9F9S|1|M2|G|16
9F9S|1|M2|A|17
9F9S|1|M2|U|18
9F9S|1|M2|C|19
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
- Chain M2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain MK
- 60S ribosomal protein L17-A
- Chain Mm
- 60S ribosomal protein L32
- Chain My
- 60S ribosomal protein L4-A
Coloring options: