IL_9F9S_170
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- (OMG)A(A2M)AG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9F9S|1|M1|A|933, 9F9S|1|M1|G|937
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_170 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.0638
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
9F9S|1|M1|OMG|805
9F9S|1|M1|A|806
9F9S|1|M1|A2M|807
9F9S|1|M1|A|808
9F9S|1|M1|G|809
*
9F9S|1|M1|C|931
9F9S|1|M1|U|932
9F9S|1|M1|A|933
9F9S|1|M1|G|934
9F9S|1|M1|U|935
9F9S|1|M1|A|936
9F9S|1|M1|G|937
9F9S|1|M1|C|938
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MG
- 60S ribosomal protein L13-A
- Chain MI
- 60S ribosomal protein L15-A
- Chain Mh
- 60S ribosomal protein L37-A
- Chain Mq
- 60S ribosomal protein L28
- Chain My
- 60S ribosomal protein L4-A
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