IL_9F9S_173

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_173 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.0602

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

9F9S|1|M1|U|834
9F9S|1|M1|G|835
9F9S|1|M1|A|836
9F9S|1|M1|A|837
9F9S|1|M1|G|838
*
9F9S|1|M1|U|855
9F9S|1|M1|G|856
9F9S|1|M1|G|857
9F9S|1|M1|A|858
9F9S|1|M1|G|859

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MM

60S ribosomal protein L19-A

Chain Mb

60S ribosomal protein L43-A

Chain Mw

60S ribosomal protein L2-A