IL_9F9S_183
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9F9S|1|M1|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_183 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.0628
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
9F9S|1|M1|G|999
9F9S|1|M1|C|1000
9F9S|1|M1|G|1001
9F9S|1|M1|A|1002
9F9S|1|M1|A|1003
9F9S|1|M1|U|1004
*
9F9S|1|M1|A|1046
9F9S|1|M1|A|1047
9F9S|1|M1|A|1048
9F9S|1|M1|C|1049
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M3
- 5S ribosomal RNA; 5S rRNA
- Chain ME
- 60S ribosomal protein L10
- Chain MO
- 60S ribosomal protein L21-A
- Chain Mz
- 60S ribosomal protein L5
Coloring options: