IL_9F9S_195
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9F9S|1|M1|C|1196, 9F9S|1|M1|A|1302, 9F9S|1|M1|U|1305, 9F9S|1|M1|G|1306
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_195 not in the Motif Atlas
- Homologous match to IL_8C3A_055
- Geometric discrepancy: 0.0608
- The information below is about IL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|M1|G|1194
9F9S|1|M1|A|1195
9F9S|1|M1|C|1196
9F9S|1|M1|A|1197
9F9S|1|M1|C|1198
9F9S|1|M1|C|1199
9F9S|1|M1|A|1200
9F9S|1|M1|C|1201
9F9S|1|M1|A|1202
9F9S|1|M1|A|1203
9F9S|1|M1|A|1204
9F9S|1|M1|A|1205
*
9F9S|1|M1|U|1299
9F9S|1|M1|G|1300
9F9S|1|M1|A|1301
9F9S|1|M1|A|1302
9F9S|1|M1|A|1303
9F9S|1|M1|A|1304
9F9S|1|M1|U|1305
9F9S|1|M1|G|1306
9F9S|1|M1|G|1307
9F9S|1|M1|A|1308
9F9S|1|M1|U|1309
9F9S|1|M1|G|1310
9F9S|1|M1|G|1311
9F9S|1|M1|C|1312
9F9S|1|M1|G|1313
9F9S|1|M1|C|1314
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M3
- 5S ribosomal RNA; 5S rRNA
- Chain MB
- 60S ribosomal protein L7-A
- Chain ME
- 60S ribosomal protein L10
- Chain MJ
- 60S ribosomal protein L16-A
- Chain Me
- Ubiquitin-60S ribosomal protein L40
- Chain Ml
- 60S ribosomal protein L33-A
- Chain Mx
- 60S ribosomal protein L3
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