IL_9F9S_206
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 9F9S|1|M1|A|1588, 9F9S|1|M1|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_206 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.0576
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
9F9S|1|M1|C|1532
9F9S|1|M1|U|1533
9F9S|1|M1|A|1534
9F9S|1|M1|A|1535
9F9S|1|M1|G|1536
*
9F9S|1|M1|C|1585
9F9S|1|M1|G|1586
9F9S|1|M1|A|1587
9F9S|1|M1|A|1588
9F9S|1|M1|A|1589
9F9S|1|M1|G|1590
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Mf
- 60S ribosomal protein L39
- Chain Mh
- 60S ribosomal protein L37-A
- Chain Mk
- 60S ribosomal protein L34-A
- Chain Mw
- 60S ribosomal protein L2-A
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