IL_9F9S_213

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

9F9S|1|M1|C|1779

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_213 not in the Motif Atlas

Homologous match to IL_8C3A_075

Geometric discrepancy: 0.0905

The information below is about IL_8C3A_075

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

9F9S|1|M1|C|1669
9F9S|1|M1|C|1670
*
9F9S|1|M1|G|1778
9F9S|1|M1|C|1779
9F9S|1|M1|G|1780

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MM

60S ribosomal protein L19-A

Chain Mk

60S ribosomal protein L34-A