IL_9F9S_227

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9F9S|1|M1|U|2159, 9F9S|1|M1|U|2175, 9F9S|1|M1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_227 not in the Motif Atlas

Homologous match to IL_8P9A_311

Geometric discrepancy: 0.082

The information below is about IL_8P9A_311

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14684.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

4

Unit IDs

9F9S|1|M1|C|2156
9F9S|1|M1|G|2157
9F9S|1|M1|A|2158
9F9S|1|M1|U|2159
9F9S|1|M1|G|2160
9F9S|1|M1|G|2161
*
9F9S|1|M1|U|2173
9F9S|1|M1|G|2174
9F9S|1|M1|U|2175
9F9S|1|M1|U|2176
9F9S|1|M1|G|2177
9F9S|1|M1|A|2178
9F9S|1|M1|C|2179
9F9S|1|M1|G|2180

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Mb

60S ribosomal protein L43-A

Chain Mw

60S ribosomal protein L2-A

Chain R1

Small subunit ribosomal RNA; SSU rRNA