IL_9F9S_248

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_248 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.0696

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

9F9S|1|M1|G|2823
9F9S|1|M1|G|2824
9F9S|1|M1|C|2825
9F9S|1|M1|U|2826
*
9F9S|1|M1|G|2863
9F9S|1|M1|A|2864
9F9S|1|M1|U|2865
9F9S|1|M1|U|2866
9F9S|1|M1|C|2867

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain DP

Transfer RNA; tRNA

Chain ME

60S ribosomal protein L10

Chain Mp

60S ribosomal protein L29