IL_9F9S_250

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9F9S|1|M1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_250 not in the Motif Atlas

Homologous match to IL_8C3A_113

Geometric discrepancy: 0.1251

The information below is about IL_8C3A_113

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

9F9S|1|M1|G|2828
9F9S|1|M1|U|2829
9F9S|1|M1|G|2830
*
9F9S|1|M1|U|2858
9F9S|1|M1|U|2859
9F9S|1|M1|U|2860
9F9S|1|M1|U|2861
9F9S|1|M1|U|2862

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain DP

Transfer RNA; tRNA

Chain ME

60S ribosomal protein L10

Chain Mx

60S ribosomal protein L3