IL_9F9S_253

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GUG(A2M)G

Length

8 nucleotides

Bulged bases

9F9S|1|M1|G|2945, 9F9S|1|M1|A2M|2946

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_253 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0709

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

9F9S|1|M1|C|2879
9F9S|1|M1|U|2880
9F9S|1|M1|C|2881
*
9F9S|1|M1|G|2943
9F9S|1|M1|U|2944
9F9S|1|M1|G|2945
9F9S|1|M1|A2M|2946
9F9S|1|M1|G|2947

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Ma

60S ribosomal protein L23-A

Chain Mx

60S ribosomal protein L3