IL_9F9S_260

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

9F9S|1|M1|A|3142, 9F9S|1|M1|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_260 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.0602

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9F9S|1|M1|C|3004
9F9S|1|M1|A|3005
9F9S|1|M1|A|3006
9F9S|1|M1|U|3007
*
9F9S|1|M1|A|3139
9F9S|1|M1|G|3140
9F9S|1|M1|A|3141
9F9S|1|M1|A|3142
9F9S|1|M1|C|3143
9F9S|1|M1|G|3144

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MJ

60S ribosomal protein L16-A

Chain Mx

60S ribosomal protein L3