IL_9F9S_270
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 9F9S|1|M1|A|3180, 9F9S|1|M1|A|3186, 9F9S|1|M1|U|3207, 9F9S|1|M1|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_270 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.0949
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|M1|U|3179
9F9S|1|M1|A|3180
9F9S|1|M1|C|3181
9F9S|1|M1|G|3182
9F9S|1|M1|A|3183
9F9S|1|M1|A|3184
9F9S|1|M1|U|3185
9F9S|1|M1|A|3186
9F9S|1|M1|A|3187
9F9S|1|M1|G|3188
*
9F9S|1|M1|C|3204
9F9S|1|M1|G|3205
9F9S|1|M1|C|3206
9F9S|1|M1|U|3207
9F9S|1|M1|G|3208
9F9S|1|M1|A|3209
9F9S|1|M1|A|3210
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MA
- 60S ribosomal protein L6-A
- Chain MD
- 60S ribosomal protein L9-A
- Chain MH
- 60S ribosomal protein L14-A
- Chain MJ
- 60S ribosomal protein L16-A
- Chain MN
- 60S ribosomal protein L20-A
- Chain Ml
- 60S ribosomal protein L33-A
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