IL_9F9S_274

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_274 not in the Motif Atlas

Homologous match to IL_8C3A_134

Geometric discrepancy: 0.1113

The information below is about IL_8C3A_134

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

9F9S|1|M1|C|3235
9F9S|1|M1|U|3236
9F9S|1|M1|U|3237
9F9S|1|M1|G|3238
*
9F9S|1|M1|C|3249
9F9S|1|M1|U|3250
9F9S|1|M1|U|3251
9F9S|1|M1|G|3252

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MJ

60S ribosomal protein L16-A