IL_9F9S_281

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_281 not in the Motif Atlas

Homologous match to IL_8P9A_362

Geometric discrepancy: 0.1863

The information below is about IL_8P9A_362

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9F9S|1|M1|A|3342
9F9S|1|M1|G|3343
9F9S|1|M1|A|3344
9F9S|1|M1|G|3345
*
9F9S|1|M1|C|3360
9F9S|1|M1|G|3361
9F9S|1|M1|A|3362
9F9S|1|M1|U|3363

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MM

60S ribosomal protein L19-A

Chain Ri

40S ribosomal protein S8-A