IL_9F9S_288
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUCCC*GAUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_288 not in the Motif Atlas
- Homologous match to IL_8C3A_147
- Geometric discrepancy: 0.0793
- The information below is about IL_8C3A_147
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.10
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
9F9S|1|M3|U|32
9F9S|1|M3|U|33
9F9S|1|M3|C|34
9F9S|1|M3|C|35
9F9S|1|M3|C|36
*
9F9S|1|M3|G|41
9F9S|1|M3|A|42
9F9S|1|M3|U|43
9F9S|1|M3|C|44
9F9S|1|M3|A|45
Current chains
- Chain M3
- Saccharomyces cerevisiae S288C 5S ribosomal RNA
Nearby chains
- Chain M1
- Large subunit ribosomal RNA; LSU rRNA
- Chain MF
- 60S ribosomal protein L11-A
- Chain Mz
- 60S ribosomal protein L5
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