IL_9F9S_298

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_298 not in the Motif Atlas

Homologous match to IL_8P9A_380

Geometric discrepancy: 0.0753

The information below is about IL_8P9A_380

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

9F9S|1|R1|G|109
9F9S|1|R1|U|110
9F9S|1|R1|U|111
9F9S|1|R1|A|112
*
9F9S|1|R1|U|302
9F9S|1|R1|U|303
9F9S|1|R1|U|304
9F9S|1|R1|C|305

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Re

40S ribosomal protein S4-A

Chain Ri

40S ribosomal protein S8-A

Chain Rl

40S ribosomal protein S11-A