IL_9F9S_301

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9F9S|1|R1|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_301 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1163

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9F9S|1|R1|G|143
9F9S|1|R1|U|144
9F9S|1|R1|A|145
9F9S|1|R1|U|146
9F9S|1|R1|A|147
9F9S|1|R1|A|148
9F9S|1|R1|C|149
*
9F9S|1|R1|G|165
9F9S|1|R1|C|166
9F9S|1|R1|U|167
9F9S|1|R1|A|168
9F9S|1|R1|A|169
9F9S|1|R1|U|170
9F9S|1|R1|A|171
9F9S|1|R1|C|172

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Rg

40S ribosomal protein S6-A

Chain Ry

40S ribosomal protein S24-A