IL_9F9S_320
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_320 not in the Motif Atlas
- Homologous match to IL_8P9A_402
- Geometric discrepancy: 0.0984
- The information below is about IL_8P9A_402
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_11411.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 12
Unit IDs
9F9S|1|R1|A|550
9F9S|1|R1|G|551
9F9S|1|R1|G|552
9F9S|1|R1|G|553
9F9S|1|R1|C|554
9F9S|1|R1|A|555
9F9S|1|R1|A|556
9F9S|1|R1|G|557
*
9F9S|1|R1|C|587
9F9S|1|R1|U|588
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CN
- Multiprotein-bridging factor 1
- Chain RE
- 40S ribosomal protein S30-A
- Chain Rc
- 40S ribosomal protein S2
- Chain Rj
- 40S ribosomal protein S9-A
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