IL_9F9S_329
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AC*GAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_329 not in the Motif Atlas
- Homologous match to IL_8C3A_430
- Geometric discrepancy: 0.1224
- The information below is about IL_8C3A_430
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.2
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 19
Unit IDs
9F9S|1|R1|A|746
9F9S|1|R1|C|747
*
9F9S|1|R1|G|802
9F9S|1|R1|A|803
9F9S|1|R1|A|804
9F9S|1|R1|U|805
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain Rh
- 40S ribosomal protein S7-A
- Chain Rl
- 40S ribosomal protein S11-A
- Chain Rw
- 40S ribosomal protein S22-A
- Chain Rx
- 40S ribosomal protein S23-A
Coloring options: