IL_9F9S_335

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUC*GGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_335 not in the Motif Atlas

Homologous match to IL_8P9A_419

Geometric discrepancy: 0.0622

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9F9S|1|R1|G|871
9F9S|1|R1|G|872
9F9S|1|R1|U|873
9F9S|1|R1|C|874
*
9F9S|1|R1|G|953
9F9S|1|R1|G|954
9F9S|1|R1|A|955
9F9S|1|R1|C|956

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain RB

40S ribosomal protein S27-A

Chain Rb

40S ribosomal protein S1-A

Chain Rn

40S ribosomal protein S13