IL_9F9S_342
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAU*GCAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_342 not in the Motif Atlas
- Homologous match to IL_8C3A_444
- Geometric discrepancy: 0.0651
- The information below is about IL_8C3A_444
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_54697.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 51
Unit IDs
9F9S|1|R1|G|1041
9F9S|1|R1|G|1042
9F9S|1|R1|A|1043
9F9S|1|R1|U|1044
*
9F9S|1|R1|G|1074
9F9S|1|R1|C|1075
9F9S|1|R1|A|1076
9F9S|1|R1|C|1077
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain RA
- Small ribosomal subunit protein eS26A
- Chain Ra
- 40S ribosomal protein S0-A
- Chain Rb
- 40S ribosomal protein S1-A
- Chain Rn
- 40S ribosomal protein S13
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