IL_9F9S_351
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 9F9S|1|R1|G|1228, 9F9S|1|R1|U|1257
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_351 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2207
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9F9S|1|R1|A|1224
9F9S|1|R1|U|1225
9F9S|1|R1|A|1226
9F9S|1|R1|A|1227
9F9S|1|R1|G|1228
9F9S|1|R1|G|1229
9F9S|1|R1|A|1230
9F9S|1|R1|U|1231
9F9S|1|R1|U|1232
9F9S|1|R1|G|1233
*
9F9S|1|R1|C|1252
9F9S|1|R1|U|1253
9F9S|1|R1|U|1254
9F9S|1|R1|G|1255
9F9S|1|R1|A|1256
9F9S|1|R1|U|1257
9F9S|1|R1|U|1258
9F9S|1|R1|U|1259
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain RD
- Small ribosomal subunit protein uS14A
- Chain RF
- Ubiquitin
- Chain Rk
- 40S ribosomal protein S10-A
- Chain Rm
- 40S ribosomal protein S12
Coloring options: