IL_9F9S_370
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_370 not in the Motif Atlas
- Homologous match to IL_8C3A_472
- Geometric discrepancy: 0.0577
- The information below is about IL_8C3A_472
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
9F9S|1|R1|G|1642
9F9S|1|R1|U|1643
9F9S|1|R1|C|1644
*
9F9S|1|R1|G|1757
9F9S|1|R1|U|1758
9F9S|1|R1|C|1759
Current chains
- Chain R1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CM
- mRNA
- Chain DP
- Transfer RNA; tRNA
- Chain M1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Md
- 60S ribosomal protein L41-A
- Chain RE
- 40S ribosomal protein S30-A
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