IL_9F9S_378

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_378 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1016

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9F9S|1|R1|A|1678
9F9S|1|R1|G|1679
9F9S|1|R1|G|1680
9F9S|1|R1|A|1681
9F9S|1|R1|U|1682
*
9F9S|1|R1|A|1719
9F9S|1|R1|G|1720
9F9S|1|R1|A|1721
9F9S|1|R1|A|1722
9F9S|1|R1|U|1723

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Mu

60S ribosomal protein L24-A

Chain Rg

40S ribosomal protein S6-A

Chain Ri

40S ribosomal protein S8-A