IL_9F9S_382

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

9F9S|1|S1|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_382 not in the Motif Atlas

Geometric match to IL_4V88_387

Geometric discrepancy: 0.0975

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9F9S|1|S1|G|42
9F9S|1|S1|A|43
9F9S|1|S1|U|44
9F9S|1|S1|U|45
9F9S|1|S1|A|46
9F9S|1|S1|A|47
9F9S|1|S1|G|48
*
9F9S|1|S1|C|431
9F9S|1|S1|G|432
9F9S|1|S1|C|433

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Sx

40S ribosomal protein S23-A