IL_9F9S_387

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGU*AA

Length

6 nucleotides

Bulged bases

9F9S|1|S1|C|114, 9F9S|1|S1|G|115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_387 not in the Motif Atlas

Homologous match to IL_8P9A_381

Geometric discrepancy: 0.0733

The information below is about IL_8P9A_381

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9F9S|1|S1|U|113
9F9S|1|S1|C|114
9F9S|1|S1|G|115
9F9S|1|S1|U|116
*
9F9S|1|S1|A|300
9F9S|1|S1|A|301

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Se

40S ribosomal protein S4-A

Chain Si

40S ribosomal protein S8-A

Chain Sl

40S ribosomal protein S11-A