IL_9F9S_389
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUAAC*GCUAAUA
- Length
- 13 nucleotides
- Bulged bases
- 9F9S|1|S1|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_389 not in the Motif Atlas
- Geometric match to IL_4LFB_009
- Geometric discrepancy: 0.1814
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
9F9S|1|S1|U|144
9F9S|1|S1|A|145
9F9S|1|S1|U|146
9F9S|1|S1|A|147
9F9S|1|S1|A|148
9F9S|1|S1|C|149
*
9F9S|1|S1|G|165
9F9S|1|S1|C|166
9F9S|1|S1|U|167
9F9S|1|S1|A|168
9F9S|1|S1|A|169
9F9S|1|S1|U|170
9F9S|1|S1|A|171
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain Lu
- 60S ribosomal protein L24-A
- Chain Sg
- 40S ribosomal protein S6-A
- Chain Sy
- 40S ribosomal protein S24-A
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