IL_9F9S_403

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAU*AG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_403 not in the Motif Atlas

Homologous match to IL_8C3A_416

Geometric discrepancy: 0.1107

The information below is about IL_8C3A_416

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.1

Basepair signature

cWW-cSH-cWS-tWH-cWW

Number of instances in this motif group

5

Unit IDs

9F9S|1|S1|C|443
9F9S|1|S1|C|444
9F9S|1|S1|A|445
9F9S|1|S1|A|446
9F9S|1|S1|U|447
*
9F9S|1|S1|A|460
9F9S|1|S1|G|461

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Se

40S ribosomal protein S4-A

Chain Sj

40S ribosomal protein S9-A

Chain Sy

40S ribosomal protein S24-A