IL_9F9S_409

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_409 not in the Motif Atlas

Homologous match to IL_8C3A_423

Geometric discrepancy: 0.1515

The information below is about IL_8C3A_423

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.2

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

9F9S|1|S1|A|550
9F9S|1|S1|G|551
9F9S|1|S1|G|552
9F9S|1|S1|G|553
9F9S|1|S1|C|554
9F9S|1|S1|A|555
9F9S|1|S1|A|556
9F9S|1|S1|G|557
*
9F9S|1|S1|C|587
9F9S|1|S1|U|588

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain SE

40S ribosomal protein S30-A

Chain Sc

40S ribosomal protein S2

Chain Sj

40S ribosomal protein S9-A