IL_9F9S_411
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9F9S|1|S1|A|579, 9F9S|1|S1|U|581, 9F9S|1|S1|U|582
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_411 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.1726
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9F9S|1|S1|G|562
9F9S|1|S1|U|563
9F9S|1|S1|G|564
9F9S|1|S1|C|565
9F9S|1|S1|C|566
9F9S|1|S1|A|567
9F9S|1|S1|G|568
*
9F9S|1|S1|C|575
9F9S|1|S1|G|576
9F9S|1|S1|G|577
9F9S|1|S1|U|578
9F9S|1|S1|A|579
9F9S|1|S1|A|580
9F9S|1|S1|U|581
9F9S|1|S1|U|582
9F9S|1|S1|C|583
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain CM
- mRNA
- Chain SE
- 40S ribosomal protein S30-A
- Chain Sd
- Small ribosomal subunit protein uS3
- Chain Sx
- 40S ribosomal protein S23-A
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