IL_9F9S_414
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- 9F9S|1|S1|U|629
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_414 not in the Motif Atlas
- Homologous match to IL_8C3A_428
- Geometric discrepancy: 0.5191
- The information below is about IL_8C3A_428
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.5
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9F9S|1|S1|C|627
9F9S|1|S1|G|628
9F9S|1|S1|U|629
9F9S|1|S1|A|630
9F9S|1|S1|G|631
*
9F9S|1|S1|U|968
9F9S|1|S1|C|969
9F9S|1|S1|A|970
9F9S|1|S1|A|971
9F9S|1|S1|G|972
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Sl
- 40S ribosomal protein S11-A
- Chain Sn
- 40S ribosomal protein S13
- Chain Sw
- 40S ribosomal protein S22-A
- Chain Sx
- 40S ribosomal protein S23-A
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