IL_9F9S_422

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGU*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_422 not in the Motif Atlas

Geometric match to IL_2R8S_001

Geometric discrepancy: 0.1424

The information below is about IL_2R8S_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

9F9S|1|S1|G|871
9F9S|1|S1|G|872
9F9S|1|S1|U|873
*
9F9S|1|S1|G|954
9F9S|1|S1|A|955
9F9S|1|S1|C|956

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain SB

40S ribosomal protein S27-A

Chain Sb

40S ribosomal protein S1-A

Chain Sn

40S ribosomal protein S13