IL_9F9S_425

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

9F9S|1|S1|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_425 not in the Motif Atlas

Homologous match to IL_8P9A_422

Geometric discrepancy: 0.2566

The information below is about IL_8P9A_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57741.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

9F9S|1|S1|U|893
9F9S|1|S1|U|894
9F9S|1|S1|G|895
9F9S|1|S1|U|896
9F9S|1|S1|C|897
9F9S|1|S1|A|898
9F9S|1|S1|G|899
*
9F9S|1|S1|C|910
9F9S|1|S1|U|911
9F9S|1|S1|U|912
9F9S|1|S1|G|913
9F9S|1|S1|G|914
9F9S|1|S1|A|915
9F9S|1|S1|U|916
9F9S|1|S1|U|917
9F9S|1|S1|U|918
9F9S|1|S1|A|919

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain Sb

40S ribosomal protein S1-A

Chain So

40S ribosomal protein S14-A