IL_9F9S_429

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAU*GCAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_429 not in the Motif Atlas

Homologous match to IL_8P9A_426

Geometric discrepancy: 0.1226

The information below is about IL_8P9A_426

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9F9S|1|S1|G|1041
9F9S|1|S1|G|1042
9F9S|1|S1|A|1043
9F9S|1|S1|U|1044
*
9F9S|1|S1|G|1074
9F9S|1|S1|C|1075
9F9S|1|S1|A|1076
9F9S|1|S1|C|1077

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain SA

Small ribosomal subunit protein eS26A

Chain Sa

40S ribosomal protein S0-A

Chain Sb

40S ribosomal protein S1-A

Chain Sn

40S ribosomal protein S13