IL_9F9S_441

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_441 not in the Motif Atlas

Homologous match to IL_8P9A_436

Geometric discrepancy: 0.2963

The information below is about IL_8P9A_436

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38565.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

9F9S|1|S1|A|1234
9F9S|1|S1|C|1235
9F9S|1|S1|A|1236
*
9F9S|1|S1|U|1249
9F9S|1|S1|U|1250
9F9S|1|S1|U|1251

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain SD

Small ribosomal subunit protein uS14A

Chain SF

Ubiquitin