IL_9F9S_447

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_447 not in the Motif Atlas

Homologous match to IL_8P9A_442

Geometric discrepancy: 0.0983

The information below is about IL_8P9A_442

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

9F9S|1|S1|U|1290
9F9S|1|S1|G|1291
9F9S|1|S1|G|1292
*
9F9S|1|S1|C|1323
9F9S|1|S1|G|1324
9F9S|1|S1|A|1325

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Sa

40S ribosomal protein S0-A

Chain Sc

40S ribosomal protein S2

Chain Sd

Small ribosomal subunit protein uS3

Chain Sr

40S ribosomal protein S17-B