IL_9F9S_450
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAUA*UUCU
- Length
- 8 nucleotides
- Bulged bases
- 9F9S|1|S1|A|1346, 9F9S|1|S1|U|1347
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_450 not in the Motif Atlas
- Homologous match to IL_8C3A_462
- Geometric discrepancy: 0.3751
- The information below is about IL_8C3A_462
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25234.1
- Basepair signature
- cWW-cSH-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|S1|A|1345
9F9S|1|S1|A|1346
9F9S|1|S1|U|1347
9F9S|1|S1|A|1348
*
9F9S|1|S1|U|1377
9F9S|1|S1|U|1378
9F9S|1|S1|C|1379
9F9S|1|S1|U|1380
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain SG
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain Sd
- Small ribosomal subunit protein uS3
- Chain Sq
- 40S ribosomal protein S16-A
- Chain Su
- Small ribosomal subunit protein uS10
Coloring options: